Generate report for MLExpResso package.

Function generate_report produces a pdf report containing information about functionalities of package MLExpResso.

generate_report(data.m, data.e, condition.m, condition.e, test.m, test.e, genes)

Arguments

data.m	Data frame containing information for methylation.
data.e	Data frame containing information for expression.
condition.m	Condition for methylation.
condition.e	Condition for expression.
test.m	Test results for methylation.
test.e	Test results for expression.
genes	The name of the gene or vector of genes names we want to visualise.

Value

PDF with report containing information about MLExpResso package.

See also

calculate_test, aggregate_probes

Examples

# NOT RUN {
library(MLExpRessoData)
cond_met <- ifelse(BRCA_met$SUBTYPE == "LumA","LumA","other")
cond_exp <- ifelse(BRCA_exp$SUBTYPE == "LumA","LumA","other")

BRCA_methylation_gene <- aggregate_probes(BRCA_met, keep = "SUBTYPE")

test1  <- calculate_test(BRCA_exp[,-1], condition_exp, test = "lrt")
test2  <- calculate_test(BRCA_methylation_gene[,-1], condition_met, test = "ttest")
data_met <- BRCA_met
data_exp <- BRCA_exp

report <- generate_report(data_exp, data_met, cond_exp, cond_met, test1, test2, "BRCA2")

# }