All functions
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aggregate_probes()
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Aggregating CpG probes to genes |
calculate_comparison_table()
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Results from test for two datasets. |
calculate_test()
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Statistical computations for methylation and expression data. |
generate_report()
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Generate report for MLExpResso package. |
illumina_humanmethylation_27_data
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Illumina_humanmethylation_27_data |
make_dictionary_data()
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transforms genome dataset |
plot_diff_boxplot()
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Boxplot for expression in groups |
plot_gene()
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Visualisations for genes. |
plot_means()
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Visualise the p-values for genes. |
plot_methylation_path()
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Methylation path on chosen gene. |
plot_pvalues()
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Visualise the p-values of expression and methylation for genes. |
plot_volcano()
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Visualise the p-values of expression and methylation for genes. |
plot_volcanoes()
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Visulisations for methylation and expression. |