All functions

aggregate_probes()

Aggregating CpG probes to genes

calculate_comparison_table()

Results from test for two datasets.

calculate_test()

Statistical computations for methylation and expression data.

generate_report()

Generate report for MLExpResso package.

illumina_humanmethylation_27_data

Illumina_humanmethylation_27_data

make_dictionary_data()

transforms genome dataset

plot_diff_boxplot()

Boxplot for expression in groups

plot_gene()

Visualisations for genes.

plot_means()

Visualise the p-values for genes.

plot_methylation_path()

Methylation path on chosen gene.

plot_pvalues()

Visualise the p-values of expression and methylation for genes.

plot_volcano()

Visualise the p-values of expression and methylation for genes.

plot_volcanoes()

Visulisations for methylation and expression.