Illumina_humanmethylation_27_data

The variables are as follows:

• Name. CG number from CG database (format cg########).

• GenomeBuild. Genome build.

• Chr. Chromosome on which the target locus is located.

• MapInfo. Cancer subtype.

• Source. Genomic position of C in CG dinucleotide.

• SourceVersion. Genomic position source.

• SourceSeq. Original sequence of the region covered by assay probes.

• TSS_Coordinat. Transcription start site genomic coordinate.

• Gene_Strand. Gene strand.

• Gene_ID. RefSeq identifier (GeneID).

• Symbol. Gene Symbol.

• Synonym. Gene synonyms.

• Accession. Gene Accession (this is the accession of the longest transcript).

• GID. GI ID.

• Annotation. Gene annotation from NCBI database.

• Product. Gene product description from NCBI database.

• Distance_to_TSS. Distance of CG dinucleotide to transcription start site.

• CPG_ISLAND. oolean variable denoting whether the loci is located in a CpG island (by relaxed definition) .

• CPG_ISLAND_LOCATIONS. Chromosomal location and genomic coordonates of the CpG island from NCBI database.

• MIR_CPG_ISLAND. Chromosome:start-end of upstream CPG island from a micro RNA.

• MIR_NAMES. Name of micro RNA near locus.

Format

data.frame