Boxplot for expression in groups

Function plot_diff_boxplot generates a boxplot of values from choosen data frame column with division in groups.

plot_diff_boxplot(data, condition = "", gene, sqrt.trans = FALSE,
  title = TRUE)

Arguments

data	Data frame containing interesing values.
condition	Vector of length equal to numer of rows of data. Vector condition should contains names of groups corresponding to rows.
gene	String containing name of gene with values for boxplot.
sqrt.trans	Root square y-axis transformation.
title	Plot title, by default id of gene.

Value

Object of class ggplot containing boxplot for values from choosen gene broken down to groups.

See also

plot_gene

Examples

# NOT RUN {
library(MLExpRessoData)
condition_expr <- ifelse(BRCA_exp7$SUBTYPE == "LumA","LumA","other")
plot_diff_boxplot(BRCA_exp, "BRCA2", condition_expr, sqrt.trans=TRUE)
# }