All functions
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create_tiles_fixed_length
|
Create regions for testing methylation difference |
create_tiles_max_gap
|
Create regions for testing methylation difference |
draw_methylation
|
Plot DMR region |
find_DMR
|
Finding DMR |
get_stats
|
Summarize regions |
get_top
|
Get n top region |
preprocessing
|
Preprocessing data |
data
|
Methylation data in chromosome 1. |
test_ks
|
Kolmogorov-Smirnov test for methylation data |
test_reg_corr_mixed
|
Logistic regression with random effects and given correlation matrix results for methylation data |
test_reg_log
|
Logistic regression results for methylation data |
test_reg_mixed
|
Logistic regression with random effects results for methylation data |
test_t
|
t-Stundent test for methylation data |
test_wilcoxon
|
Wilcoxon test for methylation data |